PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016437854.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 399aa    MW: 44700.9 Da    PI: 8.6965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016437854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-066082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C++ F r  nL+ H r+H
  XP_016437854.1 60 YICEICNQGFQRDQNLQMHRRRH 82
                    89********************9 PP

2zf-C2H217.51.2e-05137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k H++t+
  XP_016437854.1 137 WVCEKCSKAYAVQSDYKAHLKTC 159
                     58*******************98 PP

3zf-C2H211.10.0012167185523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  XP_016437854.1 167 DCGRVFSRVESFIEHQDTC 185
                     9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.82E-55982No hitNo description
Gene3DG3DSA:3.30.160.601.1E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00656082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8666082IPR007087Zinc finger, C2H2
PROSITE patternPS01359062142IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5128158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.82E-5132157No hitNo description
SMARTSM0035552137164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLDNSSSSPV GPSSSSEAFN NSAENSGVSN RRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
ICEICNQGFQ RDQNLQMHRR RHKVPWKLVK RETPQVKKRV FVCPEPTCLH HHPCHALGDL  120
VGIKKHFRRK HSNNKQWVCE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDTCTVRRS SSTRPDLQPL QAGCSSRTAS STSPSSDTNF SSIAPNLPRL TIMPLPNNSD  240
QHNEFPSSNN NDQQHNLELR LLPSSIACPS RTSDHENQAP HLKLSIGSST RDSILVSKDH  300
KELNLAMAEK AYAEEARRQA KRQIEFAELE FANAKRIRQQ AQAEIERAQN LKEEATKRIS  360
SSILEITCHA CKNKFQATDE SSPAMSYMSS ATTEAEGEH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437854.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-155IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLA5ADE60.0A5ADE6_VITVI; Putative uncharacterized protein
TrEMBLB9HJL40.0B9HJL4_POPTR; Zinc finger family protein
STRINGVIT_01s0011g06400.t010.0(Vitis vinifera)
STRINGPOPTR_0008s13980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-139indeterminate(ID)-domain 14